Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: pysam
Upstream-Contact: Andreas Heger <andreas.heger@gmail.com>
Source: https://github.com/pysam-developers/pysam
Files-Excluded: htslib/*

Files: *
Copyright: 2009-2015 Andreas Heger,
	             Tildon Grant Belgrad,
		     Martin Goodson,
		     Kevin Jacobs
	   2008-2010 Genome Research Ltd.
License: MIT

Files: pysam/cbcf.pxd pysam/cbcf.pyx
Copyright: 2015 Kevin Jacobs <jacobs@bionformed.com>
License: MIT

Files: samtools/*
Copyright: 2009-2012 Broad Institute
	   2008-2014 Genome Research Ltd.
License: MIT

Files: samtools/bam_cat.*
Copyright: 2008-2009, 2011-2013 Genome Research Ltd.
	   2010 Illumina, Inc.
License: MIT

Files: samtools/bam_color.*
Copyright: 2009, 2012 University of California - Los Angeles
License: MIT

Files: samtools/bam_index.*
       samtools/bam_mate.*
Copyright: 2008-2014 Genome Research Ltd.
	   2010-2011 Broad Institute
	   2012-2013 Peter Cock, The James Hutton Institute
License: MIT

Files: samtools/bam_tview.*
       samtools/bam_tview_curses.*
       samtools/bam_tview.h
Copyright: 2008-2014 Genome Research Ltd.
	   2013 Pierre Lindenbaum <plindenbaum@yahoo.fr>
License: MIT

Files: samtools/bam_tview_html.*
Copyright: 2013 Pierre Lindenbaum, Institut du Thorax, INSERM U1087, Université de Nantes
License: MIT

Files: samtools/kprobaln.c samtools/kprobaln.c.pysam.c samtools/kprobaln.h
Copyright: 2003-2006, 2008-2010, by Heng Li <lh3lh3@live.co.uk>
License: MIT

Files: samtools/misc/ace2sam.*
Copyright: 2011 Heng Li
License: MIT

Files: samtools/misc/md5.*
Copyright: 1993 Colin Plumb
License: public-domain

Files: samtools/padding.*
Copyright: 2011-2012 Broad Institute
	   2014 Genome Research Ltd.
	   2012-2013 Peter Cock, The James Hutton Institute
License: MIT

Files: samtools/win32/zconf.h samtools/win32/zlib.h
Copyright: 1995-2005 Jean-loup Gailly <jloup@gzip.org> and Mark Adler <madler@alumni.caltech.edu>
License: BSDlike2
  This software is provided 'as-is', without any express or implied
  warranty.  In no event will the authors be held liable for any damages
  arising from the use of this software.
 .
  Permission is granted to anyone to use this software for any purpose,
  including commercial applications, and to alter it and redistribute it
  freely, subject to the following restrictions:
 .
  1. The origin of this software must not be misrepresented; you must not
     claim that you wrote the original software. If you use this software
     in a product, an acknowledgment in the product documentation would be
     appreciated but is not required.
  2. Altered source versions must be plainly marked as such, and must not be
     misrepresented as being the original software.
  3. This notice may not be removed or altered from any source distribution.
Comment: These files are not used and could be stripped from the source

Files: samtools/win32/xcurses.h
Copyright: 2008 wmcbrine
License: public-domain
Comment: These files are not used and could be stripped from the source

Files: win32/stdint.h
Copyright: 2005-2007 Paul Hsieh
License: BSD-3-clause

Files: win32/getopt.*
Copyright: 1987-2001 Free Software Foundation, Inc.
License: LGPL-2.1+

License: BSD-3-clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
 1. Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.
 2. Redistributions in binary form must reproduce the above copyright
    notice, this list of conditions and the following disclaimer in the
    documentation and/or other materials provided with the distribution.
 3. Neither the name of the University nor the names of its contributors
    may be used to endorse or promote products derived from this software
    without specific prior written permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT 
 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR 
 A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE HOLDERS OR
 CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 
 EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 
 PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 
 PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF 
 LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 
 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 
 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

License: MIT
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
 in the Software without restriction, including without limitation the rights
 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 copies of the Software, and to permit persons to whom the Software is
 furnished to do so, subject to the following conditions:
 .
 The above copyright notice and this permission notice shall be included in
 all copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 THE SOFTWARE.

License: public-domain
 No copyright is claimed.
 This code is in the public domain; do with it what you wish.

License: LGPL-2.1+
 This package is free software; you can redistribute it and/or
 modify it under the terms of the GNU Lesser General Public
 License as published by the Free Software Foundation; either
 version 2.1 of the License, or (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 Lesser General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <http://www.gnu.org/licenses/>.
 .
 On Debian systems, the complete text of the GNU Lesser General
 Public License can be found in "/usr/share/common-licenses/LGPL-2.1".
 
